Find all our publication in the collection https://hal.inrae.fr/MYCSA/
2025
Caron T., Crequer E., Le Piver M., Le Prieur S., Brunel S., Snirc A., Cueff G., Daniel Roueyre D, Place M., Chassard C., Simon A., Rodríguez de la Vega R.C., Coton M., Coton E., Foulongne-Oriol M., Branca B., Giraudt T. (2025) Identification of quantitative trait loci (QTLs) for key cheese making phenotypes in the blue-cheese mold Penicillium roqueforti. PLoS Genetics 21(4): e1011669. https://doi.org/10.1371/journal.pgen.1011669
Felici L., Atanasova V., Ponts N., Ducos C., Francesconi S., Sestili F., Richard-Forget F., Balestra F.G. (2025) Cyanidin 3-O-glucoside and other anthocyanins affect enniatins production in Fusarium avenaceum. Fungal Biology, 129, 101640, https://doi.org/10.1016/j.funbio.2025.101640
Garcia M.-A., Mahmoud R, Bancal M, Bancal P, Bernillon S, Pinson-Gadais L, Richard-Forget F, Foulongne-Oriol M. (2025). Ecophysiological behavior of major Fusarium species in response to combinations of temperature and water activity constraints. Appl Environ Microbiol 0:e01832-24. https://doi.org/10.1128/aem.01832-24
Gauthier O., Bernillon S., Khireddine R., Saupique C., Gallegos N., Callon C., Chassard C., Richard-Forget F. (2024). Use of Penicillium roqueforti in plant-based veined-blue cheese: a source of mycotoxin hazards?. Food Control, 111130. https://doi.org/10.1016/j.foodcont.2024.111130
Leannec‑Rialland V., Atanasova V., Cabezas‑Cruz A., Chereau S.,Minh‑Trang T., Pinson‑Gadais L.,· Richard‑Forget F. (2025) New insights into the antifungal and anti-mycotoxigenic potential of the TickCore3 peptide against Fusarium species causing Fusarium head blight. Journal of Plant Diseases and Protection 132, 74. https://doi.org/10.1007/s41348-025-01069-2
Manga A.G.B., Sene G., Diatta A.A., Diop T.A., Barroso G., Tuinen D.v. (2025) Molecular Diversity of Arbuscular Mycorrhizal Fungi Associated with the Rhizosphere of Vachellia seyal Del. from Selected Saline Soils in Senegal. Microbiology. Research, 16, 19. https://doi.org/10.3390/microbiolres16010019
Savignac J.-M, Atanasova V., Chéreau S., Bernillon S., Gallegos N., Ortega V., Richard-Forget F. (2025). Biochemical factors of maize silks associated with host susceptibility to Fusarium graminearum, The Crop Journal, 13 (6), 1795-1804. https://doi.org/10.1016/j.cj.2025.09.019
Savoie J.-M., Pinson-Gadais L., Vidal R., Vindras-Fouillet C. (2025) Fate of mycotoxins in local-race populations of maize collected in the southwest of france, from the field to the flour and meal in organic farms. Agriculture, 15, 1064. https://doi.org/10.3390/agriculture15101064
Savoie J.-M., Vidal R., Vindras C., Robin M.H., Jard G., Sicard D. (2025). Myco3C : Identifier et limiter les risques de mycotoxines dans les céréales produites, stockées et transformées en circuit court. Innovations Agronomiques,107, 242-257. https://hal.inrae.fr/hal-05383209v1
Tran-Minh, T., Ponts, N., Bernillon, S., Waffo-Téguo, P., Rouger, C., Richard-Forget, F., Atanasova, V. (2025). Integrated metabolomic and transcriptomic analysis to elucidate the antifungal and antimycotoxin mechanisms of natural stilbenoids against Fusarium graminearum. Microbiological Research, 128370. https://doi.org/10.1016/j.micres.2025.128370
2024
Atanasoff-Kardjalieff A.K., Berger H., Steinert K., Janevska S., Ponts N., Humpf H.-U., Kalinina S., Studt-Reinhold L. et al. (2024). Incorporation of the histone variant H2A.Z counteracts gene silencing mediated by H3K27 trimethylation in Fusarium fujikuroi. Epigenetics & Chromatin, 2024, 17 (1), pp.7 ⟨10.1186/s13072-024-00532-y⟩. ⟨hal-04538556⟩
Bashir H., Asif M., Ghafoor A., Niazi A.R., Khalid A.N., Parveen G., Harun N., Afshan N.-S., Bibi A., Callac P. (2024) Multigene phylogeny and morphological descriptions of five species of Agaricus sect. Minores from subtropical climate zones of Pakistan. PLoS ONE 19(7): e0302222. https://doi.org/10.1371/journal.pone.0302222
Dominguez C., Yebdri E., Ros J., Wibaut T., Fleurat-Lessard F., Savoie J.-M. (2024) Expérimentation archéologique de stockage de grains en silo souterrain. Méthodologie et premiers résultats. Archeosciences, revue d'Archéométrie 48(2), 111-130. https://doi.org/10.4000/14eas
Dvorak E., Mazet I.D., Couture C., Delmotte F., Foulongne-Oriol M. (2024) Recombination landscape and karyotypic variations revealed by linkage mapping in the grapevine downy mildew pathogen Plasmopara viticola.G3, jkae259, ⟨10.1093/g3journal/jkae259⟩ ⟨hal-04734121⟩
El Baghazaoui R., Belmalha S., Boutagayout A., Nassiri L., El Alami S., Savoie J.-M., Bouiamrine E.H. (2024) Insecticidal properties and chemical characterization of Laurus nobilis L. essential oils from two regions of Morocco against Callosobruchus maculatus (Coleoptera: Bruchinae). Agriculture 2024, 14, 1150. https://doi.org/10.3390/agriculture14071150
Dvorak E., Mazet I.D., Couture C., Delmotte F., Foulongne-Oriol M. (2024) Recombination landscape and karyotypic variations revealed by linkage mapping in the grapevine downy mildew pathogen Plasmopara viticola. bioRxiv preprint https://doi.org/10.1101/2024.07.03.601951
Nawaz R., Murad W., Irshad M., Callac P., Hussain S. (2024) Agaricus subgenus Pseudochitonia in Malakand, Pakistan: An updated phylogeny and description of three new species. Mycologia 116(4):577-600 https://doi.org/10.1080/00275514.2024.2334473
Nguyen, T. B. H., Foulongne-Oriol, M., Jany, J. L., le Floch, G., & Picot, A. (2024). New insights into mycotoxin risk management through fungal population genetics and genomics. Critical Reviews in Microbiology, 1–22. https://doi.org/10.1080/1040841X.2024.2392179
Tardif C., Rouger C., Miranda J., Ahmed O.S., Richard-Forget F., Atanasova V., Waffo-Teguo P. (2024). Targeting of antifungal metabolites from grapevine byproducts by UPLC–HRMS/MS approaches using bioactivity-based molecular networking. Journal of Agricultural and Food Chemistry 72 (17), 9621-9636. https://doi.org/10.1021/acs.jafc.3c09531
Szabó B.K., Atanasova V., Ducos C., Kismányoky A., Pinson-Gadais L., Ponts N., Savignac J.-M., Körösi K., Richard-Forget F. (2024) Characterisation of sorghum cultivated in Hungary: potential health risk resulting from the occurrence of toxigenic fungi and effect of endogenous lipophilic antioxidants on mycotoxin production. World Mycotoxin Journal 17(2):131-148. https://doi.org/10.1163/18750796-bja10007
2023
Bashir I., Fatima N., Izhar A., Rehman Niazi A., Nasir Khalid A., Callac P. (2023) Agaricus radiatosquamulosus sp. nov. of A. subg. Spissicaules from Pakistan. Phytotaxa 579: 231-242. https://doi.org/10.11646/phytotaxa.579.4.1
Dominguez C., Savoie J.-M., Ros J., Fleurat-Lessard F., Wibaut T., Guillaume M., Puig C., Savaresse L. (2023) Point d’étape sur les expérimentations archéologiques d’ensilage en Roussillon. Archéo66, Bulletin AAPO, 38 : 147-155
Chakroun, Y.; Snoussi, Y.; Chehimi, M.M.; Abderrabba, M.; Savoie, J.-M.; Oueslati, S. (2023) Encapsulation of Ammoides pusila essential oil into mesoporous silica particles for the enhancement of their activity against Fusarium avenaceum and its enniatins production. Molecules, 28, 3194. https://doi.org/10.3390/molecules28073194
Clairet C., Lapalu N., Simon A., Soyer J., Viaud M., Zehraoui E., Dalmais B., Fudal I., Ponts N. (2023) Nucleosome patterns in four plant pathogenic fungi with contrasted genome structures. Peer Community Journal, 3: e13. https://peercommunityjournal.org/articles/10.24072/pcjournal.227
Dall’Asta C., De Boevre M., Dellafiora L., De Saeger S., Moretti A., Pinson-Gadais L., Ponts., Richard-Forget F., Susca A. (2023) Boosting knowledge and harmonisation in the mycotoxin field through sustainable scientific alliances – MYCOBOOST. EFSA supporting publication 20(11):EN-8420, 51 p.https://doi.org/10.2903/sp.efsa.2023.EN-8420
Laffet L., Joly M., Carles L., Donnadieu-Bernard F., Romani A., Artigas J. (2023). Comparison of microbial colonization between natural and plastic substrata in a polluted watershed. FEMS Microbiology Ecology, 99(8):fiad062. , https://doi.org/10.1093/femsec/fiad062
Mihalache, O.A., De Boevre, M., Dellafiora, L., De Saeger, S., Moretti, A., Pinson-Gadais, L., Ponts, N.; Richard-Forget, F., Susca, A., Dall’Asta, C. 2023. The occurrence of non-regulated mycotoxins in foods: a systematic review. Toxins 15, 583. https://doi.org/10.3390/toxins15090583
Savignac J.-M., Atanasova V., Chereau S., Ducos C., Gallegos N., Ortega V., Ponts N., Richard-Forget F. (2023) Carotenoids occurring in maize affect the redox homeostasis of Fusarium graminearum and its production of type B trichothecene mycotoxins: New insights supporting their role in maize resistance to Giberella Ear Rot. Journal of Agricultural and Food Chemistry. 71, 7, 3285–3296. https://doi.org/10.1021/acs.jafc.2c06877
Tran T.M., Atanasova V., Tardif C., Richard-Forget F. (2023) Stilbenoids as promising natural product-based solutions in a race against mycotoxigenic fungi: A Comprehensive Review. Journal of Agricultural and Food Chemistry In press. https://doi.org/10.1021/acs.jafc.3c00407
Vásquez-Ocmín P.G., Marti G., Gadea A., Cabanac G., Vásquez-Briones J., Casavilca-Zambrano S., Ponts N., Jargeat P. , Haddad M., Bertani S. (2023). Metabotyping of Andean pseudocereals and characterization of emerging mycotoxins. Food Chemistry, 407 : Special issue Metabolomics in food, pp.135134. https://doi.org/10.1016/j.foodchem.2022.135134
Zhang M.-Z., Xu J.-P., Callac P., Chen M.-Y., Wu Q., Wach M., Mata G., Zhao R.-L. (2023) Insight into the evolutionary and domesticated history of the most widely cultivated mushroom Agaricus bisporus via mitogenome sequences of 361 global strains. BMC Genomics 24, 182. https://doi.org/10.1186/s12864-023-09257-w
2022
Ahmed O.S., Tardif C., Rouger C., Atanasova V., Richard-Forget F., Waffo-Téguo P. (2022). Naturally occurring phenolic compounds as promising antimycotoxin agents: Where are we now? Compr Rev Food Sci Food Saf. 2022;1–37. https://doi.org/10.1111/1541-4337.12891
Atanasova V., Bresso E., Maigret B., Martins N.F., Richard-Forget, F. (2022). Computational strategy for minimizing mycotoxins in cereal crops: Assessment of the biological activity of compounds resulting from virtual screening. Molecules, 27, 2582. https://doi.org/10.3390/molecules27082582
Chakroun Y., Oueslati S., Pinson-Gadais L., Abderrabba M., Savoie, J.-M. (2022) Characterization of Fusarium acuminatum: a potential Enniatins producer in Tunisian wheat. Journal of Fungi, 8, 458. https://doi.org/10.3390/jof8050458
Dominguez C., Yebdri E., Fleurat-Lessard F., Ros J., Savoie J.M., Wibaut T. (2022) Ensilage expérimental en Roussillon. Approche croisée de l’archéologie et de la biologie. Archéopages : archéologie & société, Hors série 6, 178-186. ISSN : 1622-8545. https://shs.hal.science/halshs-03882573
Etier A., Dumetz F., Chéreau S., Ponts N. (2022). Post-translational modifications of histones are versatile regulators of fungal development and secondary metabolism. Toxins 14, 317. https://doi.org/10.3390/toxins14050317
Hadjout S., Chéreau S., Mekliche L., Marchegay G., Ducos C., Boureghda H., Zouidi M., Barreau C., Bouznad Z., Richard-Forget F. (2022). Molecular identification of some Fusarium isolates and their chemotypes involved in fusarium head blight on Durum wheat in Algeria. Archives of Phytopathology and Plant Protection, 55:4, 499-513, https://doi.org/10.1080/03235408.2022.2034363
Jalalzadeh B., Barroso G., Savoie J.M. Callac P. (2022). Experimental outcrossing in Agaricus bisporus revealed a major and unexpected involvement of airborne mycelium fragments. Journal of Fungi, 8(12), 1278; https://doi.org/10.3390/jof8121278
Leannec-Rialland V., Atanasova V., Chereau S., Tonk-Rügen M., Cabezas-Cruz A., Richard-Forget F. (2022). Use of Defensins to develop eco-friendly alternatives to synthetic fungicides to control phytopathogenic fungi and their mycotoxins. Journal of Fungi 8(3):229. https://doi.org/10.3390/jof8030229
Loron A., Wang Y., Atanasova V., Richard-Forget F., Gardrat C., Coma V. (2022) Chitosan for eco-friendly control of mycotoxinogenic Fusarium graminearum, Food Hydrocolloids, 2022, 108067, https://doi.org/10.1016/j.foodhyd.2022.108067
Mapook, A., Hyde, K.D., Hassan, K….. Ponts N., Studt-Reinhold L., Richard-Forget F…., Stadler M. Ten decadal advances in fungal biology leading towards human well-being. Fungal Diversity (2022). https://doi.org/10.1007/s13225-022-00510-3
Merel D., Mata G., Savoie J.M., Salmones D., Guerrero-Analco1 J.A. (2022). Productos naturales de Basidiomicetos cultivables: alternativas químicas para el control de hongos micotoxigénicos del maíz en México. In D. Martínez-Carrera, Y. Mayett Moreno & M. R. Maimone Celorio (eds). Los Hongos Comestibles, Funcionales y Medicinales: Aportación a la Dieta, la Salud, la Cultura, al Ambiente, y al Sistema Agroalimentario de México. Biblioteca Básica de Agricultura. México. Capítulo 7, pp. 243-257. ISBN 978-607-715-447-1
Nicaise V., Chereau S., Pinson-Gadais L., Verdal-Bonnin M.-N, Ducos C., Jimenez M., Coriou C., Bussière S., Robert T., Nguyen C., Richard-Forget F., Cornu J.-Y.(2022 )Interaction between the accumulation of cadmium and deoxynivalenol mycotoxin produced by Fusarium graminearum in durum wheat grains. Journal of Agricultural and Food Chemistry. https://doi.org/10.1021/acs.jafc.2c01673
Savignac, J.-M.; Atanasova, V.; Chéreau, S.; Ortéga, V.; Richard-Forget, F. (2022) Role of tocochromanols in tolerance of cereals to biotic stresses: specific focus on pathogenic and toxigenic fungal species. Int. J. Mol. Sci. 2022, 23, 9303. https://doi.org/10.3390/ijms23169303
Vásquez-Ocmín P.G., Marti G., Gadea A., Cabanac G., Vásquez-Briones J.A., Casavilca-Zambrano S., Ponts N., Jargeat P., Haddad M., Bertani S. 2022. Metabotyping of Andean pseudocereals and characterization of emerging mycotoxins. Food Chemistry, https://doi.org/10.1016/j.foodchem.2022.135134
2021
Bashir H., Chen J., Jabeen S., Ullah S., Khan J., Niazi A.R., Zhang M., Khalid A.N., Parra L.A., Callac P. (2021) An overview of Agaricus section Hondenses and Agaricus section Xanthodermatei with description of eight new species from Pakistan. Scientific Reports 11, 12905 https://doi.org/10.1038/s41598-021-92261-5
Ducos C., Pinson-Gadais L., Chereau S., Richard-Forget F., Vásquez-Ocmín .P, Cerapio J.P., Casavilca-Zambrano S., Ruiz E, Pineau P., Bertani S., Ponts N. (2021). Natural occurrence of mycotoxin-producing fusaria in market-bought peruvian cereals: a food safety threat for Andean populations. Toxins, 13(2):172. https://doi.org/10.3390/toxins13020172
Chakroun Y., Atanasova V., Jallouli S., Oueslati S., Abderrabba M., Savoie J.-M. (2021). Tunisian thyme essential oil for controlling enniatins producing Fusarium species. Journal of International Scientific Publications: Agriculture & Food 9, 221-230. https://www.scientific-publications.net/en/article/1002161/ - https://hal.inrae.fr/MYCSA/hal-03432838v1
Chakroun Y., Oueslati S., Atanasova V., Richard-Forget F., Abderrabba M., Savoie J-M. (2021). Ammoides pusilla essential oil: a potent inhibitor of the growth of Fusarium avenaceum and its enniatin production. Molecules. 26(22):6906. https://doi.org/10.3390/molecules26226906
Foulongne-Oriol M., Taskent O., Kües U., Sonnenberg A.S.M., van Peer A.F., Giraud T. (2021) Mating-type locus organization and mating-type chromosome differentiation in the bipolar edible button mushroom Agaricus bisporus. Genes, 12, 1079. https://doi.org/10.3390/genes12071079
Hartmann, F.E, Duhamel, M., Carpentier, F., Hood, M.E., Foulongne-Oriol, M., Silar, P., Malagnac, F., Grognet, P., Giraud, T. (2021). Recombination suppression and evolutionary strata around mating-type loci in fungi: documenting patterns and understanding evolutionary and mechanistic causes. New Phytologist, 229 (5): 2470-2491. ⟨10.1111/nph.17039⟩.
Laurent B., Moinard M., Spataro C., Chéreau S., Zehraoui E., Blanc R., Lasserre P., Ponts N.,Foulongne-Oriol M. (2021). QTL mapping in Fusarium graminearum identified an allele of FgVe1 involved in reduced aggressiveness. Fungal Genetics and Biology - Pre proof - https://doi.org/10.1016/j.fgb.2021.103566
Leannec-Rialland V., Cabezas-Cruz A., Atanasova V., Chereau S., Ponts N., Tonk M., Vilcinskas A., Ferrer N., Valdés J.J., Richard-Forget F. (2021). Structural and physicochemical determinants governing the efficiency of tick defensin gamma-core to control Fusarium graminearum and the production of type B trichothecene mycotoxins. Scientific Reports 11:7962. https://doi.org/10.1038/s41598-021-86904-w
Leslie, J.F.; Moretti, A.; Mesterházy, Á.; Ameye, M.; Audenaert, K.; Singh, P.K.; Richard-Forget, F.; Chulze, S.N.; Ponte, E.M.D.; Chala, A.; Battilani, P.; Logrieco, A.F. (2021). Key global actions for mycotoxin management in wheat and other small grains. Toxins 2021, 13, 725. https://doi.org/10.3390/toxins13100725
Ling Z.-L., Zhou J.-L, Parra L.A., De Kesel A., Callac P., Cao B., He M.Q., Zhao R-L (2021) Four new species of Agaricus subgenus Spissicaules from China, Mycologia, DOI: https://www.tandfonline.com/doi/full/10.1080/00275514.2020.1852808
Montibus M., Vitrac X., Coma V., Loron A., Pinson-Gadais L., Ferrer N., Verdal-Bonnin M.-N., Gabaston J., Waffo-Téguo P., Richard-Forget .F, Atanasova V. (2021). Screening of wood/forest and vine by-products as sources of new drugs for sustainable strategies tocontrol Fusarium graminearum and the production of mycotoxins. Molecules. 2021; 26(2):405. ; https://doi.org/10.3390/molecules26020405
Navarro D., Chaduli D., Taussac, S., Lesage-Meessen L., Sacha Grisel, Haon M., Callac P., Courtecuisse R., Decock C., Dupont J., Richard-Forget F., Fournier J., Guinberteau J., Lechat C., Moreau P.-A., Pinson-Gadais L., Rivoire B., Sage L., Welti S., Rosso M.-N., Berrin J.G., Bissaro B., Favel A. (2021) Large-scale phenotyping of 1,000 fungal strains for the degradation of non-natural, industrial compounds. Communications Biology 4, 871. https://doi.org/10.1038/s42003-021-02401-w
Ortiz-Santana B., Chen J., Parra L.A., Angelini C., Lodge D.J., Kerrigan R.W., Callac P. (2021) The genus Agaricus in the Caribbean II. Refined phylogeny of Agaricus subg. Spissicaules with description of two new sections and eight new species. Mycological Progress 20: 381–411. https://doi.org/10.1007/s11557-021-01686-9
Richard-Forget F., Atanassova V., Chéreau S. (2021). Using metabolomics to guide strategies to tackle the issue of the contamination of food and feed with mycotoxins: A review of the literature with specific focus on Fusarium mycotoxins. Food Control 121. 107610. https://doi.org/10.1016/j.foodcont.2020.107610
2020
Boonmee S., Atanasova V., Chéreau S., Marchegay G., Hyde K.D., Richard-Forget F. (2020). Efficiency of Hydroxycinnamic Phenolic Acids to Inhibit the Production of Ochratoxin A by Aspergillus westerdijkiae and Penicillium verrucosum. International Journal of Molecular Sciences 21, 8548 https://doi.org/10.3390/ijms21228548
Chen Z., Zehraoui E., Atanasoff-Kardjalieff A.K., Strauss J., Studt L., Ponts N. (2020) Effect of H2A.Z deletion is rescued by compensatory mutations in Fusarium graminearum. PLoS Genet 16(10): e1009125. https://doi.org/10.1371/journal.pgen.100912
Chen Z., Ponts N. (2020). H2A.Z and chromatin remodeling complexes: a focus on fungi. Critical Reviews in Microbiology 46(45):1-17. doi: http://dx.doi.org/10.1080/1040841X.2020.1781784
Eygue M., Richard-Forget F., Cappelier J.-M., Pinson-Gadais L., Membré J.-M. (2020) Development of a risk-ranking framework to evaluate simultaneously biological and chemical hazards related to food safety: Application to emerging dietary practices in France. Food Control 115, 107279. https://www.sciencedirect.com/science/article/abs/pii/S095671352030195X
Gautier C., Pinson-Gadais L., Richard-Forget F. (2020) The Fusarium Mycotoxins Enniatins: an updated review of their occurrence, the producing Fusarium species and the abiotic determinants of their accumulation in crop harvests. Journal of Agricultural and Food Chemistry. 68, 17, 4788–4798: DOI: 10.1021/acs.jafc.0c00411
Gautier, C.; Pinson-Gadais, L.; Verdal-Bonnin, M.-N.; Ducos, C.; Tremblay, J.; Chéreau, S.; Atanasova, V.; Richard-Forget, F. (2020). Investigating the efficiency of hydroxycinnamic acids to inhibit the production of Enniatins by Fusarium avenaceum and modulate the expression of Enniatins biosynthetic Genes. Toxins 2020, 12, 735. https://doi.org/10.3390/toxins12120735
Merel D., Savoie J.-M., Mata G., Salmones D., Ortega C., Atanasova V., Chéreau S., Monribot-Villanueva J.L., Guerrero-Analco J.A. (2020). Methanolic extracts from cultivated mushrooms affect the production of fumonisins B and fusaric acid by Fusarium verticillioides. Toxins 12, 366. https://www.mdpi.com/2072-6651/12/6/366
Para L., Cappelli A., Benazza-Bouregba M. (2020). On two rare species of A. subsect. Pattersonia: Agaricus salvatoris sp. nov. and new records of A. Laparrae from Europe and Africa. Micologia e Vegetazione Mediterranea 35 (2): 91-112.
Ponts N., Gautier C., Gouzy J., Pinson-Gadais L., Foulongne-Oriol M., Ducos C., Richard-Forget F., Savoie J.M., Zhao C., Barroso G. (2020). Evolution of Fusarium tricinctum and Fusarium avenaceum mitochondrial genomes is driven by mobility of introns and of a new type of palindromic microsatellite repeats. BMC genomics 21: 358, doi.org/10.1186/s12864-020-6770-2
